SUPBUB: Superbubbles
SUPBUB is a tool that, in linear time, finds out superbubbles (special subgraph-structures) in a directed graph.
It is being used in the vg (variation graph) toolkit developed by Richard Durbin's lab at the Wellcome Trust Sanger Institute.ElDeS: Elastic-Degenerate Strings
ElDeS is a tool that finds out occurrences of degenerate patterns in an elastic-degenerate text.
.Clustered Clumps
ClusteredClumps is a tool that finds out clustered-clumps of : degenerate patterns in a solid text; solid patterns in a degenerate text; and degenerate patterns in a degenerate text.
.APDS: : Approximate Patter-matching in Degenerate Strings
APDS is a tool that finds out (in linear time) approximate occurrences of a degenerate pattern in a given input sequence.
.WebSlate
WebSlate is a language/environment to create slides which are displayable in a web-browser. The language syntax is LATEX-inspired and compiles down to HTML/CSS/JS. Elm , a new functional reactive programming language has been used for development.
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