Mathematical Foundations in Bioinformatics

MatBio 2017

September 14

Talks

Invited talks

• Stilianos Arhondakis, Technical University of Crete (Chania, Greece)
  Compositional strategies for the exploitation of the transcriptome during biological processes/conditions using RNA-seq technology


• Knut Reinert, Freie Universität Berlin (Germany)
  Engineering meets algorithms


• Giovanna Rosone, Università di Pisa (Italy)
  Compression and analysis of DNA sequences via EBWT


• Prudence Wong, University of Liverpool (UK)
  Modelling and Analysis of the Invasion Process using Graph Sparsification and Network Flow

Contributed talks

• Giulia Bernardini, Università di Pisa (Italy)
  Pattern Matching on Elastic-Degenerate Text with Errors


• Nantia Iakovidou, Aristotle University of Thessaloniki (Greece)
  A multislice network approach to profiling of EEG connectivity reorganization during epileptic seizures


• Aikaterini Karanasiou, University of Rome Tor Vergata (Italy)
  Incremental Low-High Orders of Directed Graphs and Applications


• Rafael Ktistakis, University of Leicester (UK)
  A succinct representation of a lossless sequence predictor


• Neerja Mhaskar, McMaster University (Canada)
  Frequency Cover in Strings


• Pierre Morisse, Université de Rouen (France)
  Enhanced de Bruijn graphs


• Simone Pignotti, LIGM/CNRS Université Paris-Est (France)
  ProPhyle: a phylogeny-based metagenomic classifier using Burrows-Wheeler Transform


• Afaf Saaidi, Laboratoire d'Informatique de l'Ecole Polytechnique (France)
  Short reads mapping using SHAPE mutational profile